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[R] RNAsamba: coding potential assessment using ORF and whole transcript sequence information

Landing page: https://www.biorxiv.org/content/10.1101/620880v1

Paper: https://www.biorxiv.org/content/biorxiv/early/2019/04/28/620880.full.pdf

In this paper, the IGLOO structure is used as an alternative to RNNs for the biological task of predicting whether a RNA sequence codes for proteines or not. This approach improves upon standard methods. Contrary to GRUs and LSTMs, IGLOO can deal with a large number of time steps, i.e. more than 25,000 which is particularly suitable for biological data.

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Toronto AI is a social and collaborative hub to unite AI innovators of Toronto and surrounding areas. We explore AI technologies in digital art and music, healthcare, marketing, fintech, vr, robotics and more. Toronto AI was founded by Dave MacDonald and Patrick O'Mara.