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[R] RNAsamba: coding potential assessment using ORF and whole transcript sequence information

Landing page: https://www.biorxiv.org/content/10.1101/620880v1

Paper: https://www.biorxiv.org/content/biorxiv/early/2019/04/28/620880.full.pdf

In this paper, the IGLOO structure is used as an alternative to RNNs for the biological task of predicting whether a RNA sequence codes for proteines or not. This approach improves upon standard methods. Contrary to GRUs and LSTMs, IGLOO can deal with a large number of time steps, i.e. more than 25,000 which is particularly suitable for biological data.

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